PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g07410
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 331aa    MW: 36758.2 Da    PI: 5.092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g07410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-112562961055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  CA10g07410 256 RKRRERINERLKILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 296
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.529246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14246312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12251305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-12252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-12255300No hitNo description
PfamPF000102.3E-8256296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEPVASMSEG DWSSFSGMCF TEEADFMAQF LGNCSLPNEL PGSSNYGASS SFWNGHDHES  60
NMNMEGVPMY SSNDSMYSGG SGILFHPPSH ETYYPSYSRP ILMRNDSSIT TEHGVMDASN  120
PIEGDDFLNQ DVSNDSMEFD VNMNEAVLDG KVLQLGRIDY EQFPRDKMDH SPSDSSKKRA  180
LLHGPAGNVP KNKRSTKLQM DLKTGDMDGK NKAVLQRQNS VISCCSVDES NVSLKLTQKS  240
RASRGSATDP QSLYARKRRE RINERLKILQ SLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK  300
LLSSDDLWMY APIAYNGMDI GLDRRIGVPK *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544221.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLA0A1U8ECV30.0A0A1U8ECV3_CAPAN; transcription factor bHLH84-like
STRINGXP_009602073.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-62bHLH family protein