PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g15220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19977.5 Da    PI: 8.4698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g15220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-141563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ien+   + +fskRr g+ KKA EL   Cd+++ +ii+s+tgk + +
  CA09g15220 15 KKIENQADLYASFSKRRSGLYKKARELVRECDVDIGMIILSPTGKPHSF 63
                68******************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-21766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.768767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-22877IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-12929IPR002100Transcription factor, MADS-box
PfamPF003191.9E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEDKKGKGRR KIPMKKIENQ ADLYASFSKR RSGLYKKARE LVRECDVDIG MIILSPTGKP  60
HSFFHPTVDA IISRFQNPDI QLSISTQLVA AHARHRVNEL NNRLEELDTI KNASVFQKNV  120
YDEVMETRQK SRWESVEELS EEELTKFEAW LNTVGSDLQN RLNQLENGAS SSQG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540670.11e-100PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G2YUB41e-126A0A2G2YUB4_CAPAN; Uncharacterized protein
STRINGSolyc04g056740.1.11e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-24AGAMOUS-like 57