PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA09g07780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 24057.9 Da PI: 9.2808 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.5 | 1.4e-35 | 9 | 105 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCa+Ck++r+kC++ Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e++r++a++sl++eA +r++dPv G +g +++++++l+ k++ +++ CA09g07780 9 ACASCKHQRKKCTDRCVLAPYFPAEKTREFKAVHKVFGVSNITKIVKNLREDDRRRAVESLIWEAFCRQKDPVLGPYGEYKRVHEELKLYKTQYQQI 105 7***************************************************************************************999987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.414 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-34 | 9 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MQKSSGTAAC ASCKHQRKKC TDRCVLAPYF PAEKTREFKA VHKVFGVSNI TKIVKNLRED 60 DRRRAVESLI WEAFCRQKDP VLGPYGEYKR VHEELKLYKT QYQQILHQGS NNNNTDNNGM 120 MYEATTQGLI NGWNINTNRN DNYINHENSI VESWSSYNNK IINPLHHHVQ NIEKLRTENS 180 NGSIVVVPQQ QAYNEFNQQY FLAGRYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-21 | 8 | 106 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-21 | 8 | 106 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541258.1 | 1e-154 | PREDICTED: LOB domain-containing protein 2 | ||||
TrEMBL | A0A2G2YU12 | 1e-155 | A0A2G2YU12_CAPAN; LOB domain-containing protein 2 | ||||
TrEMBL | A0A2G3BMI6 | 1e-153 | A0A2G3BMI6_CAPCH; LOB domain-containing protein 2 | ||||
STRING | Solyc12g010810.1.1 | 1e-126 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10177 | 18 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 3e-46 | LOB domain-containing protein 2 |