PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA09g02970
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 165aa    MW: 19020.8 Da    PI: 10.2437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA09g02970genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.62.8e-171563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie++  r+vt+skR++g+ KKA+E S+L++a+v v+++  +gk + y
  CA09g02970 15 KLIEDNEARTVTLSKRKKGLYKKAKEYSTLTGADVGVVLITASGKAHSY 63
                569******************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-21766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.642767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-22888IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-14929IPR002100Transcription factor, MADS-box
PfamPF003197.1E-191763IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDKRTGKGRQ KIEMKLIEDN EARTVTLSKR KKGLYKKAKE YSTLTGADVG VVLITASGKA  60
HSYGSTSIEK ITNKFLELKQ DDRQSDHDDM GKSDVFETFE DLRKEVQALN EKEKERILRY  120
KIMHLHSEVP PDKHRLKQLE AIKSWLDKIK KRKERSCSSQ TNQV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541016.11e-117PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1U8E3M11e-115A0A1U8E3M1_CAPAN; Uncharacterized protein
TrEMBLA0A2G2YQC41e-115A0A2G2YQC4_CAPAN; agamous-like MADS-box protein AGL29
STRINGXP_009779179.16e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-19AGAMOUS-like 61