PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g18860
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 296aa    MW: 33160 Da    PI: 7.7437
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g18860genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95.1e-102068254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL  +v+ +k+L
  CA08g18860 20 KVLKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQMLKDL 68
                566789********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.4081868IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-61973No hitNo description
SuperFamilySSF474595.76E-131984IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-82068IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-112090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-72474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MHSSKQKPEA ELKDSIAARK VLKADREKLR RDRLNEQFME LGKTLDPDRP KNDKASILSD  60
TVQMLKDLTA QVSRLKSEYA ALTDESRELT QEKNDLREEK TSLKSDIESL NAQYQQRMRS  120
MYPWAGMDHS LVMHPPSYSY PMPVPVPTGP VPMHPSLQPY PFFSNHNPAV VPNPSSYVQY  180
MTSNTLIEQQ PTQYMSPVIQ PGSVIRQESR NKFSDQGESR TEKNEDSNEV ATDLELKTPG  240
STSEQDLSSG QKKPRKLPKK DNSLTDGNSS SRCSSSHSVQ AVSSNSVVRG TKSDD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251259KKPRKLPKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2408540.0AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence.
GenBankAC2408590.0AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539909.10.0PREDICTED: transcription factor bHLH121 isoform X2
SwissprotQ9LT236e-87BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1U8E7V20.0A0A1U8E7V2_CAPAN; transcription factor bHLH121 isoform X2
TrEMBLA0A2G3BWG90.0A0A2G3BWG9_CAPCH; Transcription factor
STRINGSolyc01g111130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-81bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]