PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g16840
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 375aa    MW: 41386.2 Da    PI: 5.4801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g16840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-112973371055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  CA08g16840 297 RKRRERINERLRTLQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 337
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-14286352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12292346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-12296341No hitNo description
PfamPF000103.1E-8297337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVLYISKRPS PSNIPNNLEG YTHQSNRASP CIIRKSNMEP VVAMSEGEWS SLSGTCSTEE  60
ANFMAQLFGS CPNELPSSSN IGLPIFWTGH ESNIGGTSEI SMYSSDDANS SMYHFPSSSN  120
FQPMLLRNNT SMTMEQSSLP PANNIIEADA IEFLNKEASN DSMESGENNM PESVLHGQGL  180
QLGREYDQMQ VPEQSEGSKK RSRSPVDHIP KNKRSVKPKK NMKSVIDDEI GMKENNNTNL  240
LHRQSSFSCC SEDESNVSSY DLYGLASSDN SKGVSAPNGK SRANRGSATD PQSLYARKRR  300
ERINERLRTL QSLVPNGTKV DISTMLEEAV QYVKFLQLQI KLLSSDDLWM YAPIAYNGMD  360
IGLDLKIGIP NPKS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582353.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLA0A1U8HM590.0A0A1U8HM59_CAPAN; Transcription factor bHLH54
TrEMBLA0A2G2Y2H70.0A0A2G2Y2H7_CAPAN; transcription factor bHLH84-like
STRINGPGSC0003DMT4000871430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-53bHLH family protein