PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA08g09720
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YC
Protein Properties Length: 325aa    MW: 35869.5 Da    PI: 6.2699
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA08g09720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.81.8e-16601342498
       NF-YC  24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                 arikki++adedv +i+  +Pvl+ska elf+ +l  r++  +     +t++   ++ +v++ ++fdfl ++v +
  CA08g09720  60 ARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 134
                 8*********************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.6E-1760119IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.8E-2360120IPR009072Histone-fold
SuperFamilySSF471134.37E-1966136IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MRLLLRAVKS TASTMCNGLI MTAVFALLKQ ITKRKKVLFS GGGIAYDDGR SYFLCVNVQA  60
RIKKIMQADE DVGKIAMAVP VLVSKALELF LQDLCDRTYD ITLRRGAKTV NSLHLKHCVQ  120
SYNVFDFLRE VVSKVPDYGH SDAAGEMPKR RKVATEEHHD SEDEFKRSRT EMSPACNSGR  180
GRGRGRGRGR GRVSRADREL SRPDMQLESC ATVQQSGQQN PNPGTQTENS AEPEGSPKQD  240
STVCDKETSV ITAPSLKINV DYSIDKPAAP EVAACTPSPK PANEKAEEGP QWSLEMDRMV  300
IDPAHMSQLN TSVAEEEEDY DEEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-17601201575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181190RGRGRGRGRG
2181191RGRGRGRGRGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141430.0BT014143.1 Lycopersicon esculentum clone 133262F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538307.10.0PREDICTED: dr1-associated corepressor-like
TrEMBLA0A2G2YYM80.0A0A2G2YYM8_CAPAN; Dr1-associated corepressor
STRINGSolyc01g096710.2.11e-152(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79602230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.16e-57nuclear factor Y, subunit C11