PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g08650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 27633.8 Da PI: 5.0644 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 4.9e-19 | 43 | 94 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ft+eq++ Le+ Fe + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k CA08g08650 43 RRFTDEQIKSLETIFETETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 94 48*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.2 | 6.1e-40 | 42 | 132 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+++eq+k+LE+ Fe+e+kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ Lk++yd+l+++ e+L+ke+++L +l++ CA08g08650 42 ARRFTDEQIKSLETIFETETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILKSNYDNLASQYESLKKEKQSLLIQLQK 132 69***********************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-19 | 21 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.617 | 36 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.6E-16 | 39 | 100 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.93E-16 | 43 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-20 | 43 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-16 | 43 | 94 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.0E-5 | 67 | 76 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 76 | 92 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-16 | 96 | 136 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MFDVGEFSPT SSAALSAECF SSSSCFSSPS SSKKKKINSN NARRFTDEQI KSLETIFETE 60 TKLEPRKKLQ LARELGLQPR QVAIWFQNKR ARWKSKQLER DYSILKSNYD NLASQYESLK 120 KEKQSLLIQL QKLNDVMKKD SIGLDSDKRA DAIKKNIEMD GRPSLSFDLS EHGANGVISD 180 DDSCIKPNYL GLNEDTDHHL LKMVEAGDSS LTSPENWGSL DEDGLLDQQP SSTTYDQWWD 240 FWS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-118 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016538251.1 | 1e-179 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Refseq | XP_016538252.1 | 1e-179 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 4e-64 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A1U8DTA9 | 1e-177 | A0A1U8DTA9_CAPAN; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | A0A1U8DVR6 | 1e-177 | A0A1U8DVR6_CAPAN; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | Solyc01g096320.2.1 | 1e-117 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 5e-63 | homeobox 12 |
Publications ? help Back to Top | |||
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