PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA08g08510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14373.5 Da PI: 8.917 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.7 | 2.8e-10 | 39 | 102 | 23 | 80 |
.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 23 aeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 + + ++++ +++++++d++ + ++kl+ +++ gr+v+ +GW++ k+n+L+ gD++ CA08g08510 39 CWKLlddliaSEDNDIGVQVRVMDPRCKFHDMKLNRWNSVGRFVFNRGWNSLLKENKLEKGDTL 102 3333555555344457899*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-11 | 11 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-12 | 12 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-7 | 49 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.94E-10 | 51 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 125 aa Download sequence Send to blast |
MAIRLGGGSR PVYIARKQVE NSDFSLQQSR LLITASTHCW KLLDDLIASE DNDIGVQVRV 60 MDPRCKFHDM KLNRWNSVGR FVFNRGWNSL LKENKLEKGD TLDLWHFETP LNQPCFAINI 120 IKNQ* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339801.1 | 2e-35 | PREDICTED: B3 domain-containing protein At2g32645-like | ||||
TrEMBL | A0A2G2YY79 | 7e-88 | A0A2G2YY79_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000314 | 2e-34 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G20600.1 | 5e-08 | B3 family protein |