PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G20600.1 | ||||||||
Common Name | F2D10.9, F5M15.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 237aa MW: 27282.6 Da PI: 4.3442 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.2 | 1.6e-14 | 126 | 215 | 2 | 82 |
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 +k+l++sdv + +rl+l+k+ ++e ++++ ++++++++ ++g +++++k+ ++++++ vlt+GW +Fv + gL + Dfv+ AT1G20600.1 126 KKQLMSSDVDTDqSRLMLSKEQVKEKmlpfleeSEDPVKGVDVSVYGPDGevQQMKFKM--WNGDKTPVLTSGWMQFVADYGLLkTSDFVTD 215 699******99879***********9*****9977889************666666666..*********************8659999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.61E-15 | 125 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.7E-9 | 125 | 230 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.08E-16 | 125 | 214 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-15 | 126 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009025 | anatomy | vascular leaf |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MANSTGKPTS STQEDEEVTY ILAQLMQDVM DREEDIDDED DIDDEVASLP LLLVSQANQK 60 QSRKREEKTE KNQPKRVKNQ NIMKINIHDF SEETLRLIED WYNAELDPQD IFGDDEVTRR 120 FSRPIKKQLM SSDVDTDQSR LMLSKEQVKE KMLPFLEESE DPVKGVDVSV YGPDGEVQQM 180 KFKMWNGDKT PVLTSGWMQF VADYGLLKTS DFVTDGKVSQ LEHVFIRGSK VRCCNTS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18394885 | 0.0 | ||||
Genevisible | 255416_at | 1e-145 | ||||
Expression Atlas | AT1G20600 | - | ||||
AtGenExpress | AT1G20600 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G20600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G20600 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC027665 | 0.0 | AC027665.4 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence. | |||
GenBank | AC069251 | 0.0 | AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173484.1 | 1e-175 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9LM90 | 1e-176 | Y1060_ARATH; B3 domain-containing protein At1g20600 | ||||
TrEMBL | A0A178WJD0 | 1e-157 | A0A178WJD0_ARATH; Uncharacterized protein | ||||
STRING | AT1G20600.1 | 1e-174 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 | Representative plant | OGRP10517 | 3 | 4 |
Link Out ? help Back to Top | |
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Phytozome | AT1G20600.1 |
Entrez Gene | 838649 |
iHOP | AT1G20600 |
wikigenes | AT1G20600 |
Publications ? help Back to Top | |||
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