PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g07620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 148aa MW: 16633.9 Da PI: 4.8841 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.4 | 2.1e-19 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+k +r++tf+kRr+g++KKA+EL Cda++avi fs g+++ + CA08g07620 9 KRIEDKAKRHTTFTKRRQGLFKKAKELVKRCDAQAAVITFSLAGNIFAF 57 79****************************************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.619 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-24 | 3 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-19 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KAKELVKRCD AQAAVITFSL AGNIFAFGHP 60 SVDSVVNRYT AAPEQDEEAE KKGEDGVVDE ETKEDEETGM FEVPVKDMDM EELEKLNVAM 120 EEMKKKVVDR INGIVSSSKN EEDLGLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-13 | 1 | 95 | 1 | 92 | MEF2C |
5f28_B | 2e-13 | 1 | 95 | 1 | 92 | MEF2C |
5f28_C | 2e-13 | 1 | 95 | 1 | 92 | MEF2C |
5f28_D | 2e-13 | 1 | 95 | 1 | 92 | MEF2C |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016538126.1 | 1e-103 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1U8DVE9 | 1e-101 | A0A1U8DVE9_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2W6I1 | 1e-101 | A0A2G2W6I1_CAPBA; Uncharacterized protein | ||||
TrEMBL | A0A2G2YXS9 | 1e-101 | A0A2G2YXS9_CAPAN; agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2G3BT57 | 1e-101 | A0A2G3BT57_CAPCH; Uncharacterized protein | ||||
STRING | XP_009617757.1 | 7e-74 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-22 | AGAMOUS-like 61 |