PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA08g02860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 185aa MW: 20891.3 Da PI: 9.7802 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.9 | 6.1e-32 | 48 | 102 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++IlkRRq Rakle+++kl k rkpylh+SRh+hA+ R+RgsgGrF CA08g02860 48 PIYVNAKQYNAILKRRQVRAKLEAQNKL-VKDRKPYLHDSRHRHAMERARGSGGRF 102 9***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.1E-36 | 44 | 105 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.722 | 45 | 105 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.5E-24 | 48 | 70 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.3E-28 | 48 | 102 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 50 | 70 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 6.5E-24 | 79 | 102 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
ACVSYPWADS YFGRLISTYE SNAINYPQRA GVTSTRVALP LDCTESLPIY VNAKQYNAIL 60 KRRQVRAKLE AQNKLVKDRK PYLHDSRHRH AMERARGSGG RFLNTKNMQQ SNPSSPKHDK 120 NIFKQQAGAM VQHSESGSWG TSTQSGSDVT SIFNDDDMFR QPEFRVSGFP FHMQEAEDFM 180 HVGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-23 | 48 | 107 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ865409 | 1e-178 | KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome. | |||
GenBank | KJ865410 | 1e-178 | KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016537697.1 | 1e-138 | PREDICTED: nuclear transcription factor Y subunit A-3-like | ||||
TrEMBL | A0A1U8DRR5 | 1e-137 | A0A1U8DRR5_CAPAN; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A2G2YWP6 | 1e-137 | A0A2G2YWP6_CAPAN; nuclear transcription factor Y subunit A-3-like | ||||
TrEMBL | A0A2G3BRT9 | 1e-137 | A0A2G3BRT9_CAPCH; Uncharacterized protein (Fragment) | ||||
STRING | XP_009769785.1 | 1e-117 | (Nicotiana sylvestris) | ||||
STRING | XP_009608945.1 | 1e-117 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4800 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 7e-41 | nuclear factor Y, subunit A6 |