PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g14700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 518aa MW: 59123 Da PI: 5.0693 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 151.6 | 7.2e-47 | 150 | 516 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL + ea+++g++el++ ++ ++ +p g++++R+a+ L + +++s ++++s+ aa+k+f++v+P+ kf+h+taN+ CA07g14700 150 HHLLAAYGEAMENGHKELVEVIIRSIKGKINPLGESLERVASN----LFLEIEDQGS---------YLRKESSKIIEAAFKVFYQVFPLGKFAHFTANS 235 7999999*********************************985....6777888222.........22222345555799******************* PP GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrl.edleleeL 194 aI eav + ++v i+Dfd+++G+QWp++++a+ +R++ lR T +++ e++ + + +et++rL ++A+ +g++++ + ++ ++l ++l+ + CA07g14700 236 AIIEAVPDDvKTVRIVDFDMGEGIQWPPIIEAMGQRRKA---LRFTSIKKTEEEstsFQWRFKETKRRLLDYANLFGLRLQVEEMTIEELaSELRRMK- 330 ******9999**************************776...******99887777667899*********************984443303333333. PP GRAS 195 rvkp....gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpres. 279 + E l+ n++++l ++ + ++ +e+L + s+ +v++ + ea ns+ ++ + f + l yy ++f+sle +p+ CA07g14700 331 ---KrgkgSEWLVFNCMFKLPHMGTRMCRIDAleflkLATELLLAKSSTHKGIVTFGDGEAMDNSHnadyTYSAFFNKYLIYYQSIFESLELCFPNYLa 426 ...34456***************97666666544443556666667778889********888877677799999*******************99877 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373 ++r +E +l++++ + + e ++++ + +e G++ ++s+++ qak l+++ + +rv e+++++vl Wk+ +Lv vS W CA07g14700 427 QARLAMESLFLAPQVYSFSWIKIWE------EKRSVSYSCTEIGLQGKRVSKENLLQAKELVNERGTP-FRVRieeERQHEMVLEWKGTSLVRVSIW 516 ***************9987666666......455557889*************************955.66655467799***************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.572 | 123 | 495 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-44 | 150 | 516 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MQSELLHNSW CSTFHQTKFC GIQSDYENGK HGITYSSPNS KDQDSSGISF SDFTSQSFSD 60 FTSLFSDDDV LTDLPMDDSE FDDVCRWLND NESEENGNMN NISSAMKRDG DLWGPALSGV 120 SSELLSSTNR ATSLILPGNI GEMDSQMSLH HLLAAYGEAM ENGHKELVEV IIRSIKGKIN 180 PLGESLERVA SNLFLEIEDQ GSYLRKESSK IIEAAFKVFY QVFPLGKFAH FTANSAIIEA 240 VPDDVKTVRI VDFDMGEGIQ WPPIIEAMGQ RRKALRFTSI KKTEEESTSF QWRFKETKRR 300 LLDYANLFGL RLQVEEMTIE ELASELRRMK KRGKGSEWLV FNCMFKLPHM GTRMCRIDAL 360 EFLKLATELL LAKSSTHKGI VTFGDGEAMD NSHNADYTYS AFFNKYLIYY QSIFESLELC 420 FPNYLAQARL AMESLFLAPQ VYSFSWIKIW EEKRSVSYSC TEIGLQGKRV SKENLLQAKE 480 LVNERGTPFR VRIEEERQHE MVLEWKGTSL VRVSIWM* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579488.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A1U8HEA2 | 0.0 | A0A1U8HEA2_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2Z4G0 | 0.0 | A0A2G2Z4G0_CAPAN; nodulation-signaling pathway 2 protein-like | ||||
STRING | PGSC0003DMT400068507 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-21 | GRAS family protein |