PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g14020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 212aa MW: 24260.6 Da PI: 9.8838 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.4e-18 | 80 | 134 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ + ++ +++eLA+kl+L+ rqV vWFqNrRa+ k CA07g14020 80 RKKLRLTKEQSTLLEDSFKLHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 134 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.4 | 6.7e-37 | 80 | 168 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+sF+ +++L +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+ en+rL+ke +eLr+ CA07g14020 80 RKKLRLTKEQSTLLEDSFKLHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKWCQSLNGENNRLKKELQELRS 168 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-17 | 57 | 137 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.84E-18 | 70 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.39 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-15 | 78 | 140 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-15 | 80 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.11E-12 | 80 | 137 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.5E-17 | 136 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.1E-9 | 136 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGNDDNEACD TRLTLGLATS DHHILPKQNQ DDHKKITCQD LSIIPLHSSH DGTDKIDGSS 60 SKTCKNYTKF NNESKKIGMR KKLRLTKEQS TLLEDSFKLH TTLAMGQKQE LAAKLKLKPR 120 QVEVWFQNRR ARTKLKQTEV DCEFLKKWCQ SLNGENNRLK KELQELRSIK IDQRIHLQLS 180 KARTLALCSS CRKISRGDTD EKHETGTESG W* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555480.1 | 1e-153 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 2e-46 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2G2Z3P5 | 1e-152 | A0A2G2Z3P5_CAPAN; Homeobox-leucine zipper protein HOX17 | ||||
STRING | Solyc07g054380.1.1 | 1e-116 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 7e-45 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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