PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA07g04270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | YABBY | ||||||||
Protein Properties | Length: 195aa MW: 21808.8 Da PI: 8.0668 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 218.9 | 1.6e-67 | 6 | 166 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslk..eelleelkveeenlksnvekeesastsvssek 100 + +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q +++s +++ + ++ + e +++ + ++ ++++ ++ CA07g04270 6 DVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSSSTSSWQNHQAQvpNHTAPEYRMDFGSSTKCTMNR------MT--- 95 5689******************************************999887766666422222200222222222222222222222......11... PP YABBY 101 lsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++ + + v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl CA07g04270 96 MRTPITSNIHHEERiVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 166 22233333333333389****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-71 | 8 | 166 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.93E-8 | 108 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-4 | 114 | 160 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MASCIDVASE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSSS 60 TSSWQNHQAQ VPNHTAPEYR MDFGSSTKCT MNRMTMRTPI TSNIHHEERI VNRPPEKRQR 120 VPSAYNQFIK EEIQRIKANN PDISHREAFS TAAKNWAHFP HIHFGLMLES NNQAKLACGN 180 ASTTQAIYIC INLC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667744 | 0.0 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016579962.1 | 1e-133 | PREDICTED: axial regulator YABBY 5-like isoform X3 | ||||
Swissprot | Q8GW46 | 5e-85 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1U8H955 | 1e-131 | A0A1U8H955_CAPAN; axial regulator YABBY 5-like isoform X3 | ||||
STRING | PGSC0003DMT400079392 | 1e-118 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-87 | YABBY family protein |
Publications ? help Back to Top | |||
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