PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g28430
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 508aa    MW: 59086.2 Da    PI: 5.7385
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g28430genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.82.8e-18210292286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 Wt+qe+  Li+a++e++ +l++g+lk+ +Weev++ + ++ gf   ++s++qC++k+e+l+kry++++           ++++yfd ++
  CA06g28430 210 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSSTQCRHKIEKLRKRYRAERLKPYP------NSWQYFDLMD 292
                 ***********************************9966667766579*****************98766664......3588888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-18209294No hitNo description
PROSITE profilePS500906.33209270IPR017877Myb-like domain
SMARTSM005957.7E-5217299IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MPPPPTTNYQ QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXFLPPP DSTQPQISPS PQKKTQPIPW THQETFNLIQ AYQEKWYSLK KGQLKASQWE  240
EVAITVAARC GFDEPSKSST QCRHKIEKLR KRYRAERLKP YPNSWQYFDL MDSMERGPLP  300
IAAHPVAMVE CSNPNPNPNP NPSYSNSGNT DNHQRYYDTD SDEVDVSYMD LRKNKSKNIN  360
HIVRNGGVMG VNGNVNRMVK DRNFDDVMKG MMRNSMNVDK RKGYFGNVGI NEDEDDVEEE  420
VDEEEDEEDG DGSGGGSELA AEIRGFAERF MRMESKKIEM MKETERYRME MEKRRMEMIL  480
ETQRSLIDTI NSVVGGSHKK VKVAHEF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-120HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352691.11e-164PREDICTED: uncharacterized protein LOC102598294
TrEMBLA0A2G3CC780.0A0A2G3CC78_CAPCH; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000517881e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124661516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-27Trihelix family protein