PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g24040
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 263aa    MW: 29598.6 Da    PI: 8.8002
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g24040genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19174208135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +l
  CA06g24040 174 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGRL 208
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.52E-15167230No hitNo description
PROSITE profilePS5011411.648168204IPR000679Zinc finger, GATA-type
SMARTSM004014.1E-16168218IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14172205IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.66E-16173222No hitNo description
PfamPF003201.6E-17174208IPR000679Zinc finger, GATA-type
PROSITE patternPS003440174199IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVEQNYWDGT PMGPIVDEDF ENILNGLDLP MESLEEAGLD KDWDDSVYQL FGPIPSDALM  60
TLPLDTVNGC LDAHMTNAPN EFPEAQGNVL FQRRSPISVL ENSRSCSGGR NAPFNFGTKG  120
RRSKRVRSST LSPWILMPPL PRTTFAAKKN SDAKRVKERR KLSGAMASSL FRRCTHCEVT  180
KTPQWREGPL GPKTLCNACG VRYRSGRLLP EYRPAASPTF IPSLHSNSHR KVVEMRRKTV  240
EESPQWDSQN FVPLNNYMFN TY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577838.10.0PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP82e-55GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A1U8H9P20.0A0A1U8H9P2_CAPAN; GATA transcription factor 11-like
STRINGPGSC0003DMT4000624881e-135(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.29e-58GATA transcription factor 11