PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g23590
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 285aa    MW: 31554.1 Da    PI: 7.9513
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g23590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.42.1e-401778263
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                +e+a+kcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  CA06g23590 17 PEQAIKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 78
                6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027015.7E-341975IPR003851Zinc finger, Dof-type
ProDomPD0074789.0E-272074IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.452175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLVSTKPQQD QKKPKPPEQA IKCPRCDSSN TKFCYYNNYS LSQPRYFCKS CRRYWTKGGT  60
LRNVPVGGGC RKNKRSSSSS RSSSQEQHSI NIPNCPTNPF SYDSSDLSLA FARLQRQESG  120
PLGFENHSNI SMIMCNENPS GFLDALKGST GFLENDNPNG FHHQNLFYGV GNIINGDMGL  180
HNVENGGMGV INNNVSDQEM GLMHNYDQEI SSGTVTTTTA TTMTTVKQEM CNMARDQGDN  240
KVLWGFPWQI NGEGNNMADF DSTRRMWNGV GGSSWHGLLN SPLM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00392DAPTransfer from AT3G45610Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577631.10.0PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLA0A2G2ZDK70.0A0A2G2ZDK7_CAPAN; Dof zinc finger protein DOF2.1
STRINGPGSC0003DMT4000194161e-156(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.17e-36TARGET OF MONOPTEROS 6