PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g22580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21241 Da PI: 8.5966 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 234.6 | 2.2e-72 | 8 | 164 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 ss e+vCyv+CnfCntilavsvP +s++++vtvrCGhC +llsvn+ + q l+ ++ + + +++ + e+ + + ++++s++++++ + + CA06g22580 8 SSSLERVCYVHCNFCNTILAVSVPCNSMMTIVTVRCGHCGNLLSVNIGPSIQSLPLQDL-Q------QRQDQSSIEDGSRGYGSSSSSTNSYHRFSPI- 98 57789***************************************************995.3......3334444444445555555555566666554. PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +d ++pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl CA06g22580 99 -PTDPDLPRSPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164 .456789*9999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-72 | 11 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.9E-9 | 103 | 157 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.6E-5 | 112 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSLDMTYSSS LERVCYVHCN FCNTILAVSV PCNSMMTIVT VRCGHCGNLL SVNIGPSIQS 60 LPLQDLQQRQ DQSSIEDGSR GYGSSSSSTN SYHRFSPIPT DPDLPRSPPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLDGNK QTNKLDHAVA 180 GEAPQKSIGL Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667766 | 0.0 | KJ667766.1 Solanum sisymbriifolium YAB2 protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016577990.1 | 1e-142 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 3e-77 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1U8H3P0 | 1e-141 | A0A1U8H3P0_CAPAN; putative axial regulator YABBY 2 isoform X1 | ||||
TrEMBL | A0A2G2WMI7 | 1e-141 | A0A2G2WMI7_CAPBA; Protein YABBY 6 | ||||
STRING | PGSC0003DMT400015197 | 1e-116 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 9e-64 | YABBY family protein |
Publications ? help Back to Top | |||
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