PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g18770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | NAC | ||||||||
Protein Properties | Length: 378aa MW: 42241.1 Da PI: 7.8641 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.7 | 2.6e-54 | 19 | 145 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL kkv ++++ + +i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd+e+++ ++ l CA06g18770 19 LPPGFRFHPTDEELITHYLSKKVVDSDFFA-MAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDREIFR-GKFL 115 79*************************777.67***************888999****************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkgekt+Wv+he+rle CA06g18770 116 VGMKKTLVFYKGRAPKGEKTNWVIHEFRLE 145 ***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-58 | 13 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.743 | 19 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-27 | 20 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MENYVGVVMD DDQHHQMELP PGFRFHPTDE ELITHYLSKK VVDSDFFAMA IGEVDLNKVE 60 PWDLPWKAKM GEKEWYFFCV RDKKYPTGLR TNRATAAGYW KATGKDREIF RGKFLVGMKK 120 TLVFYKGRAP KGEKTNWVIH EFRLEGKMSL QNLPKTAKIT WVRYIRVVID VHKSLYISYS 180 VWFCMEVFQK SSGGKKIDIS GLLNLNSNEN KMGNSFLPTL TDPSSSSSSS SPFTGTAAKS 240 GHVHCFSNLF TAQNNCFNNF PLPVVSNPMD VFAASSLPNT FSCNQIVPVQ GTFSANPGSV 300 GVQDPTILQT SLENYGQDFK KEGVYGVSQE TAVISTDMNA GISSIVPNLE MKRPFVEDQV 360 PSATMVDLHG LNSLWSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-50 | 8 | 144 | 6 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-50 | 8 | 144 | 6 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-50 | 8 | 144 | 6 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-50 | 8 | 144 | 6 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-50 | 8 | 144 | 9 | 145 | NAC domain-containing protein 19 |
3swm_B | 5e-50 | 8 | 144 | 9 | 145 | NAC domain-containing protein 19 |
3swm_C | 5e-50 | 8 | 144 | 9 | 145 | NAC domain-containing protein 19 |
3swm_D | 5e-50 | 8 | 144 | 9 | 145 | NAC domain-containing protein 19 |
3swp_A | 5e-50 | 8 | 144 | 9 | 145 | NAC domain-containing protein 19 |
3swp_B | 5e-50 | 8 | 144 | 9 | 145 | NAC domain-containing protein 19 |
3swp_C | 5e-50 | 8 | 144 | 9 | 145 | NAC domain-containing protein 19 |
3swp_D | 5e-50 | 8 | 144 | 9 | 145 | NAC domain-containing protein 19 |
4dul_A | 6e-50 | 8 | 144 | 6 | 142 | NAC domain-containing protein 19 |
4dul_B | 6e-50 | 8 | 144 | 6 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-103 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016570024.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLJ2 | 1e-109 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2G2ZCB1 | 0.0 | A0A2G2ZCB1_CAPAN; NAC domain-containing protein | ||||
STRING | Solyc06g069710.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-110 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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