PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g18040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TCP | ||||||||
Protein Properties | Length: 359aa MW: 40654.1 Da PI: 8.6934 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.3 | 1.3e-38 | 111 | 260 | 4 | 133 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssa...seceaessss 80 kdrhski T++g+RdRR+Rls+e a++fF Lqd LGfdk+skt+eWLl+++ ai el+ t + sece s CA06g18040 111 SKDRHSKINTARGPRDRRMRLSLEAARKFFSLQDLLGFDKASKTVEWLLNKSDSAIEELAATnkqnsctttttttgigaicA---SnslSECEVISGTD 206 79************************************************************88887777766666655432...03346774444443 PP TCP 81 sasnsssg.kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 ++s++ ++ + k ++k+kk+++++a l +esr +arararert+ k++ + CA06g18040 207 ETSSNDKNkETVKGEKKKKKKKTNPARIEPLTRESRDRARARARERTKIKKMSQ 260 33333333244455558899999999999****************999776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-42 | 110 | 259 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.738 | 111 | 169 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.497 | 239 | 256 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MYSPSSNNCN YSPILSSINS FHIPSPSMQY ENELFFQSYH HDHIYFQQQQ QQQQEVPLME 60 DLSLHILADS TKTVLEGIVE EGGEGKGDDT MSSRNSIISG RISKNNKRSS SKDRHSKINT 120 ARGPRDRRMR LSLEAARKFF SLQDLLGFDK ASKTVEWLLN KSDSAIEELA ATNKQNSCTT 180 TTTTTGIGAI CASNSLSECE VISGTDETSS NDKNKETVKG EKKKKKKKTN PARIEPLTRE 240 SRDRARARAR ERTKIKKMSQ IDKSKAPAND LNPSGSNWKP INKTREEHVT HEQLMTFHQE 300 KQQLIGTNKE NNIVDENNLV FNGNWNPFSI FNYHDQNAGI SNEHQFTDFQ FCGKLWEG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 227 | KKKKKKK |
2 | 241 | 253 | RDRARARARERTK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM597228 | 1e-79 | HM597228.1 Solanum tuberosum BRANCHED1B (BRC1B) mRNA, complete cds. | |||
GenBank | HM921051 | 1e-79 | HM921051.1 Solanum tuberosum BRANCHED1B (BRANCHED1B) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555857.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA | ||||
TrEMBL | A0A1U8F959 | 0.0 | A0A1U8F959_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2ZCC4 | 0.0 | A0A2G2ZCC4_CAPAN; transcription factor CYCLOIDEA | ||||
STRING | Solyc06g069240.1.1 | 1e-138 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-20 | TCP domain protein 12 |