PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g16390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Dof | ||||||||
Protein Properties | Length: 206aa MW: 22585.8 Da PI: 7.0453 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.5e-39 | 19 | 78 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds ntkfCyynny+lsqPr+fCk+C+ryWtkGG lrn+PvGg++rkn k+s CA06g16390 19 QEVLKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGILRNIPVGGSSRKNSKRS 78 6789****************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 10 | 69 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-33 | 20 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.64 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MQDPSSLIYS QIKPQFPDQE VLKCPRCDSI NTKFCYYNNY NLSQPRHFCK NCKRYWTKGG 60 ILRNIPVGGS SRKNSKRSSS SSSSSKQSLR TSSLSPSSAQ NGKIEVFPTP AFPAFDQESP 120 ILDANGPFGP FLVSNGSEIG NLLEGLNPNG PNYSGSDDAA AQSENNSTRD DEYLDVQKGE 180 DSNCWNVNTN SWADLAIYTP GSRFQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC219224 | 2e-83 | AC219224.1 Solanum lycopersicum chromosome 6 clone C06SLm0074G21, complete sequence. | |||
GenBank | HG975445 | 2e-83 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 2e-83 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554856.1 | 1e-149 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
Swissprot | O82155 | 5e-39 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A2G2ZBK8 | 1e-148 | A0A2G2ZBK8_CAPAN; Dof zinc finger protein DOF1.7 | ||||
STRING | Solyc06g062520.1.1 | 2e-85 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 4e-35 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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