PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA06g13740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 247aa MW: 27384.1 Da PI: 9.244 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.7 | 1.1e-32 | 27 | 81 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH++Fv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl CA06g13740 27 KPRLRWTAELHDQFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 81 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-31 | 24 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.563 | 24 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-16 | 27 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-24 | 27 | 82 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-9 | 29 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.1E-19 | 127 | 172 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MYNSSGMGRG GGFMYENDGV VMTRDPKPRL RWTAELHDQF VDAVTKLGGP DKATPKSVLR 60 LMGLKGLTLY HLKSHLQKYR LGQLAKKQNA AEANKENCGD SGQFSLHSSG PSTSSLSMNF 120 MQGEVVPVAD AVMYQIEVQK RLQEQLQVQQ KLQMRIEAQG KYLQAILDKA QKKLPNMNSP 180 SAPEATTAQL TAFSSPLSNL LDYTVHGENR DNNIELLPTP NHIVEKEQKN DMNSINFDLN 240 SRSSFV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-20 | 27 | 80 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-20 | 27 | 80 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-20 | 27 | 80 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-20 | 27 | 80 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-20 | 27 | 80 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-20 | 27 | 80 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-20 | 27 | 80 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-20 | 27 | 80 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-20 | 27 | 80 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-20 | 27 | 80 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-20 | 27 | 80 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-20 | 27 | 80 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 6e-44 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 6e-44 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574986.1 | 0.0 | PREDICTED: myb family transcription factor APL-like isoform X2 | ||||
Swissprot | C0SVS4 | 9e-71 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A1U8GUR4 | 0.0 | A0A1U8GUR4_CAPAN; Myb family transcription factor APL | ||||
TrEMBL | A0A2G2ZAL4 | 0.0 | A0A2G2ZAL4_CAPAN; myb family transcription factor APL-like isoform X2 | ||||
STRING | PGSC0003DMT400052695 | 1e-126 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 3e-48 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|