PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g12750
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 510aa    MW: 56761.4 Da    PI: 8.1186
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g12750genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.28.2e-12734835
        GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 TplWR+gp  ++ LCnaCG ++r kg+
  CA06g12750  7 GTPLWRNGPPEKPILCNACGSRWRTKGT 34
                5********66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0043146IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.1E-8734IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.66E-6739No hitNo description
PfamPF003201.2E-9734IPR000679Zinc finger, GATA-type
CDDcd002021.06E-10847No hitNo description
PfamPF139191.6E-9274358IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSKYAAGTPL WRNGPPEKPI LCNACGSRWR TKGTLLNYTP LHARPESDDL EDYRMSRIKN  60
MSLKSKEAKV LKQKQNYDNT VVKTPDYNQG FLKGLDEDTS NRSSSGSAIS NTESSAQFGS  120
TEASDLTGPA QSNKWEAMVP SRKRTCISRS KQSSVEKLTK DLCTILHEQQ SSYFSGSSEE  180
DLLFESHKPM VSVEIGHGSV LIRHPNSIGR EEESEASSLP VNNKLHNVNE AYSRLSTPPV  240
NINRGVNLPN LGTERTKKSN SQGMEQHQIK RDKDHFEKLH ILGHHSSPLC HVDLKDVLNY  300
EEFVRHFSSD EQQQLLKYLA PVDSFAPPDS LKSMFESSHF EENLSSFQKL LAEGVFDSSL  360
SGVTIQDSRT LKRLILCYLT KSKWVEKYNL LKDTKCRSST SGSEDAGGAN AIGTGHSVNV  420
KRPLEGHHPT YTGAKKAMKS PKKVVTNSSY EQKELVDNNS SCFSPKCLFP LPSNSSPVLD  480
SLRFENDQDV LLDXIQQLLC TGRTPPTNI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575076.10.0PREDICTED: GATA transcription factor 26 isoform X2
TrEMBLA0A2G2ZAJ60.0A0A2G2ZAJ6_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000683480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-130GATA transcription factor 26