PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g10340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 31283 Da PI: 6.9649 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 7.8e-15 | 5 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +++ G +W++ ++ g+ R++k+c++rw +yl CA06g10340 5 KGPWSPQEDNILISYIQNNGHSNWRALPKLAGLLRCGKSCRLRWTNYL 52 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 58 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l CA06g10340 58 RGNFSKEEEDTIIQLHENLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 103 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.057 | 1 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-28 | 1 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 4 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-14 | 5 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-23 | 6 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.98E-8 | 7 | 52 | No hit | No description |
PROSITE profile | PS51294 | 25.51 | 53 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-14 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 58 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.49E-10 | 60 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-27 | 60 | 108 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGLKKGPWSP QEDNILISYI QNNGHSNWRA LPKLAGLLRC GKSCRLRWTN YLRPDIKRGN 60 FSKEEEDTII QLHENLGNRW SAIAARLPGR TDNEIKNVWH THLKKKLKNY QPPQNSKRHF 120 KTNHDSKKGP TTESSNNSDF STSANNTNTH KKHMKIAPNS PVLSSSEMST VTLVVDDRQR 180 VIIKEEKIES PLEYFPKIDE SFWTEELSGE KNNDNDYVMA AGLDQDIQAQ IQLSSVKEEN 240 LDNTSTKMEE DMDFWYNVFI KTGDFLELPE F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-26 | 3 | 107 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X98308 | 1e-137 | X98308.1 L.esculentum mRNA for myb-related protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553599.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9LTC4 | 2e-78 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A2G2Z9J9 | 0.0 | A0A2G2Z9J9_CAPAN; Protein ODORANT1 | ||||
STRING | PGSC0003DMT400042007 | 1e-139 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 8e-81 | myb domain protein 15 |