PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g10340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 272aa    MW: 31283 Da    PI: 6.9649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g10340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.8e-15552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l+ +++  G  +W++ ++  g+ R++k+c++rw +yl
       CA06g10340  5 KGPWSPQEDNILISYIQNNGHSNWRALPKLAGLLRCGKSCRLRWTNYL 52
                     79******************************99************97 PP

2Myb_DNA-binding51.72e-1658103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
       CA06g10340  58 RGNFSKEEEDTIIQLHENLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 103
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.057152IPR017930Myb domain
SuperFamilySSF466891.04E-28199IPR009057Homeodomain-like
SMARTSM007171.7E-11454IPR001005SANT/Myb domain
PfamPF002495.2E-14552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-23659IPR009057Homeodomain-like
CDDcd001675.98E-8752No hitNo description
PROSITE profilePS5129425.5153107IPR017930Myb domain
SMARTSM007172.0E-1457105IPR001005SANT/Myb domain
PfamPF002491.6E-1558103IPR001005SANT/Myb domain
CDDcd001677.49E-1060103No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2760108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGLKKGPWSP QEDNILISYI QNNGHSNWRA LPKLAGLLRC GKSCRLRWTN YLRPDIKRGN  60
FSKEEEDTII QLHENLGNRW SAIAARLPGR TDNEIKNVWH THLKKKLKNY QPPQNSKRHF  120
KTNHDSKKGP TTESSNNSDF STSANNTNTH KKHMKIAPNS PVLSSSEMST VTLVVDDRQR  180
VIIKEEKIES PLEYFPKIDE SFWTEELSGE KNNDNDYVMA AGLDQDIQAQ IQLSSVKEEN  240
LDNTSTKMEE DMDFWYNVFI KTGDFLELPE F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2631072105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX983081e-137X98308.1 L.esculentum mRNA for myb-related protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553599.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9LTC42e-78MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A2G2Z9J90.0A0A2G2Z9J9_CAPAN; Protein ODORANT1
STRINGPGSC0003DMT4000420071e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-81myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]