PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g09960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 373aa    MW: 42105.8 Da    PI: 4.6769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g09960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19128177255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  CA06g09960 128 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 177
                 89*******.**********82....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.8E-30127184IPR001471AP2/ERF domain
CDDcd000181.60E-33128184No hitNo description
PROSITE profilePS5103223.459128185IPR001471AP2/ERF domain
PfamPF008471.4E-12128177IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-21128184IPR016177DNA-binding domain
SMARTSM003806.3E-38128191IPR001471AP2/ERF domain
PRINTSPR003674.2E-10129140IPR001471AP2/ERF domain
PRINTSPR003674.2E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDHHNMLCPI KYTEHKKTIR KVTKSSTIKP KKTTQVRRWS EYNPTIPRTV RISVTDPDAT  60
DSSSDEDELF GRRRVKRYIN EISIETSSIN DVKALNTSRK RAAEILQPKQ KALKGKEVQL  120
PADGTVRKFR GVRQRPWGKW AAEIRDPARR VRLWLGTYDT AEEAAMVYDN AAIKLRGSNA  180
LTNFITPPTK EKSEVNVASN SGYESGDESH NLSSPTSVLR FRTSQSSEEA EQQSGSEPIL  240
EETKGDVSVS EEQCPVLVEE PTLYSMQNLE NLECQGETSV SNEYLPNDVP FLDDFFYFGA  300
AEQTLLDDTT SFPNDLCTPF DDISSWDFAN DLLLDHEVFK FKDSFQDLGA LEVDNYFKDI  360
GDFSNVDALM AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22127184159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577196.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2G2Z8W60.0A0A2G2Z8W6_CAPAN; Uncharacterized protein
STRINGXP_009624576.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-53cytokinin response factor 4