PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g06370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 409aa    MW: 45833.6 Da    PI: 6.452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g06370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.2e-1643133199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k ++ps+v+   +l +pkkf+ ++ ++k+   t++l de+ ++   k+ ++k++    l++GW++F  a+ L egD++vF+l+++ +f  +v ++r+
  CA06g06370  43 FVKFMLPSHVSGGFWLGFPKKFC-DYHLPKHD-DTVVLVDENDEESATKYLVDKTG----LSGGWRGFSIAHSLLEGDVLVFQLIQTCKF--KVYIIRE 133
                 89*********************.55566655.59***************888888....**************************9999..8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2337134IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-2037134IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-2541132No hitNo description
PROSITE profilePS5086311.49143134IPR003340B3 DNA binding domain
PfamPF023621.5E-1443133IPR003340B3 DNA binding domain
SMARTSM010193.0E-2243134IPR003340B3 DNA binding domain
PfamPF052662.4E-8286395IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MLWILDFTSL EKKAQKHTVD ANSSAMLRAA EVQANLPRQF PSFVKFMLPS HVSGGFWLGF  60
PKKFCDYHLP KHDDTVVLVD ENDEESATKY LVDKTGLSGG WRGFSIAHSL LEGDVLVFQL  120
IQTCKFKVYI IRENSLTELD GAISLLNLDF HARPIKSGTV TRNHNEVMKI CEAKQEKHLE  180
TPVINIHPDD KKEEAVLLTN LDHGPVVYQR GNVSDSGSEV LEGIRFSELR VKFKDVKDYS  240
GFTILVDGLI IDSKVPAHIR TKYYDLCLTQ SSFLHDHLLN GLNVKLAAGI ITETVNIADA  300
IRACKISTSA DYLETWDNTL KGFECLGMEV GFLRARLNKL VSLSCESENN LVSKKVELAE  360
AEEELRNLEG KVLKVKQVIQ NLDSDIEALR KKDAKFELKF KALAAAPW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754458e-66HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755188e-66HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577182.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A1U8H1480.0A0A1U8H148_CAPAN; B3 domain-containing protein
TrEMBLA0A2G2Z8S10.0A0A2G2Z8S1_CAPAN; B3 domain-containing protein Os01g0234100-like
STRINGSolyc06g034140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-40B3 family protein