PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g03570
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 339aa    MW: 39561.6 Da    PI: 6.5319
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g03570genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-16593195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                ffkv+     ++ +r+ +p +f++ ++gk   +++++l+d  g+ W + +  +k ++ +++  GW +F k+n L+ gDf++F + ++ ef l++ 
  CA06g03570  5 FFKVF--DPETSAQRMKIPTSFIDYMNGK--LTRKVSLRDGFGNMWPIGV--TKIGCDFYFHYGWTKFTKDNTLEFGDFLIFDYGKNGEFDLKLL 93
                78888..77778889********555666..6679***************..********************************98888877665 PP
2B3345.3e-112373151090
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                 v +++ l++p + +++++++ ++   ++++d+ gr+++ kl++++ + r++l +GW++ ++ n ++ +D+++ +++++  ++
  CA06g03570 237 VKRKDELYVPVDVVRDYKLDIPS--SMIIRDSAGREFQTKLKIWGDG-RIWLVGGWRSLCNWNLVDKNDICICEFVREkCSK 315
                 778999***********999555..69999***********999986.899***********************99874554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.239396IPR003340B3 DNA binding domain
PfamPF023626.1E-15594IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-18598IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-17596IPR015300DNA-binding pseudobarrel domain
CDDcd100174.66E-11593No hitNo description
SMARTSM010192.0E-7596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-15223313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-15224312IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.446228327IPR003340B3 DNA binding domain
CDDcd100177.01E-7229313No hitNo description
SMARTSM010190.0021230316IPR003340B3 DNA binding domain
PfamPF023622.7E-9236317IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MRKGFFKVFD PETSAQRMKI PTSFIDYMNG KLTRKVSLRD GFGNMWPIGV TKIGCDFYFH  60
YGWTKFTKDN TLEFGDFLIF DYGKNGEFDL KLLAINGCEK KGDGGEKKRE ERNMEHQIKI  120
EPKMKNLSRD SSSGSSSDDS DEDYVEEEVE EDEENEMEPR SKHIYKEKEE EDEEEEDEDE  180
NERVGTLMNK TPRSKARCKR ATYHKVSGRH DQFGKDIFRS GRAIQPENPY FIAKVRVKRK  240
DELYVPVDVV RDYKLDIPSS MIIRDSAGRE FQTKLKIWGD GRIWLVGGWR SLCNWNLVDK  300
NDICICEFVR EKCSKGLYLQ VQVLYEGSSS HPNKKYKK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577237.10.0PREDICTED: B3 domain-containing protein At5g60140-like
TrEMBLA0A2G2Z7J50.0A0A2G2Z7J5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000276731e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-14B3 family protein