PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA06g00220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 562aa MW: 63667.4 Da PI: 5.6117 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 294.5 | 2.7e-90 | 192 | 560 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlta 98 lv+lLl++Ae v++++++la++ +ar as +g+p+qRl +yf eAL++r+ ++ + + + + s+ + ++ al+ + P+ ++ +++ CA06g00220 192 LVHLLLAAAEEVDQQQFHLASQSIARCLWKASATGNPIQRLCFYFGEALQERIDHKIGRSPSFErKLRFLSTLAVGTTPEALT-CHTEIPFSQVMQFAG 289 68***************************************************993322222220222222222333333433.55667********** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 qaI+e v+g++++H +Df+i G+Q L+qaLa +R+++ l+iT++g+ ++kee+eetg+rL++fA++l++pf+f ++ +++++dl+ e+ +v CA06g00220 290 IQAIVENVKGATKIHLVDFNIRSGIQCTGLMQALAeQRDRPIELLKITAIGH---QEKEEIEETGKRLQSFANSLNLPFSFAMVFMSDMKDLTAESVNV 385 ***********************************66668888*********...57****************************************** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 k++E +aV + l ++ + +++ d++++++++l+P vvvv+e ea+hns+sFl+rf+ea+ +ys+lfd++e + r++ r+ +E + +g+ i+ CA06g00220 386 KEDEIVAVYCYTVLRTMI----CRQDNLDNTMRVIRGLRPAVVVVCEIEANHNSPSFLNRFVEAIFFYSVLFDCFEDCMDRDNLVRKRIEVFHIGEGIR 480 ****************99....55555777********************************************************************* PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 n+va+egaer+ r+ +l Wr+ + ++G+ ++++se+ qakl+l++++ + v++ ++l+ gWk+ p+ svS W+ CA06g00220 481 NMVAAEGAERFTRNVKLDVWRAYFARFGMVEMEVSESSRYQAKLILEQFShGSSCIVQNGGKALLVGWKGTPIKSVSIWK 560 **************************************************666677777788888**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.756 | 166 | 539 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-88 | 192 | 560 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MDSHEHLQEC GRNELINNSF VDPWYELDSE DLDSLYAVFD DKHHKNTSDK QVELLEDQRQ 60 NISDHWTQID DSSNMVLQVT PEASNGIQPQ VPRLGGFHDE KTNSISLASL GLLNNCGRLF 120 KKSSEENLSN VCRNEARVSN IPKLSTEEIL RIAGERYIQY STHKVDGLSM FIHPYASSLT 180 GLSIEQTKDM ELVHLLLAAA EEVDQQQFHL ASQSIARCLW KASATGNPIQ RLCFYFGEAL 240 QERIDHKIGR SPSFERKLRF LSTLAVGTTP EALTCHTEIP FSQVMQFAGI QAIVENVKGA 300 TKIHLVDFNI RSGIQCTGLM QALAEQRDRP IELLKITAIG HQEKEEIEET GKRLQSFANS 360 LNLPFSFAMV FMSDMKDLTA ESVNVKEDEI VAVYCYTVLR TMICRQDNLD NTMRVIRGLR 420 PAVVVVCEIE ANHNSPSFLN RFVEAIFFYS VLFDCFEDCM DRDNLVRKRI EVFHIGEGIR 480 NMVAAEGAER FTRNVKLDVW RAYFARFGMV EMEVSESSRY QAKLILEQFS HGSSCIVQNG 540 GKALLVGWKG TPIKSVSIWK F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-45 | 210 | 560 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555555.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1U8FIG6 | 0.0 | A0A1U8FIG6_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2Z6V6 | 0.0 | A0A2G2Z6V6_CAPAN; DELLA protein RGL1-like | ||||
STRING | PGSC0003DMT400018792 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 6e-46 | RGA-like 2 |