PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g20740
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 336aa    MW: 36795.1 Da    PI: 6.1052
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g20740genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17233266134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C++C   kTp+WR gp g+ktLCnaCG++y++ +
  CA05g20740 233 CQHCEIAKTPQWRAGPMGPKTLCNACGVRYKSGR 266
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-722319IPR016679Transcription factor, GATA, plant
SMARTSM004014.9E-16227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.121227263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-14231264IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.38E-14231290No hitNo description
CDDcd002023.49E-14232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003202.9E-15233266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGSNVVVDEV DCGSFFDHID DLIDFPLENE NVGLGSTDCK DFPSIWNDPL PDSDSLFSVS  60
HRNSASDLSA ELSVPYEDII QLEWLSTFVE DSFSGGGLTL GKENIPVEKE PSSQGKFQTL  120
SPVSVLESSS SSSSNSSFSS SGEKTLPLGP CHRGPQRART KRPRPTTFNP LPVFVAPGFP  180
TDQSENFAES PMKKILKLAA PEQKKKKKIK FSIPLAPFET NHNPTAQQSV RKCQHCEIAK  240
TPQWRAGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFV PSLHSNSHKK VLEMRTTIVQ  300
DNNNATLMTP PPDTTTTTQP EFNPSNNDSV EQEHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KRPRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826480.0AC182648.2 Solanum lycopersicum chromosome 5 clone C05HBa0239D11, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573916.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016573917.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1U8GRM10.0A0A1U8GRM1_CAPAN; GATA transcription factor
TrEMBLA0A2G2ZKS40.0A0A2G2ZKS4_CAPAN; GATA transcription factor
STRINGPGSC0003DMT4000599890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-40GATA transcription factor 9