PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA05g12660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 483aa MW: 53501.2 Da PI: 6.7195 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 85 | 102 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk Fs++ ++ H CA05g12660 85 VCENCGKEFSSWKSFLEH 102 6**************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 0.005 | 15 | 37 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.6 | 15 | 37 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.94E-5 | 15 | 37 | No hit | No description |
SMART | SM00355 | 6.1 | 15 | 37 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 17 | 37 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.94E-5 | 79 | 103 | No hit | No description |
SMART | SM00355 | 180 | 84 | 104 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.73E-7 | 227 | 250 | No hit | No description |
Pfam | PF13912 | 1.4E-9 | 228 | 252 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 228 | 250 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 228 | 255 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 230 | 250 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.73E-7 | 290 | 317 | No hit | No description |
Pfam | PF13912 | 6.3E-13 | 295 | 318 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 295 | 317 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.52 | 295 | 317 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 297 | 317 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MACIDQEQQQ PIFKHYCRVC KKGFVCGRAL GGHMRAHGIG DEGANIDDDD PASDWEDKFG 60 GSVKGGNKRM YQLRTNPNRQ KSNRVCENCG KEFSSWKSFL EHGKCSSEDA ESLVSSPGSE 120 GEDYINNGGR KGYGWSKRKR SLRTKIGTIS TSTYPPSEDE DLVLAKCLID LANAKVIDMS 180 LAEPEESCAS ASKEEERARN PMNYLTPLVS TRVPFDNKAK GVSNKGLFEC KACKKVFNSH 240 QALGGHRASH KKVKGCYAAK QDQLDDSLID DQDMNITQDE FTLQGSKSMK KSKIHECSIC 300 HRVFSTGQAL GGHKRCHWIT SNSPDSTSKF NFHGHMEQIN LRSNLRKSGD ALDLNIPISH 360 EDMSRIRRDP MNPLSFEVST EIHLHPWSIN AHEAKDGENH SCSDNYYLDE NINNNNNTND 420 NGNNGNNNIN GTIQSGEDDE ADSSKLKLAK LSELQDMNKN SENPSHWLQV GIGPTTEVGA 480 NP* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574675.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A1U8GU67 | 0.0 | A0A1U8GU67_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2ZIP0 | 0.0 | A0A2G2ZIP0_CAPAN; zinc finger protein ZAT4-like | ||||
STRING | PGSC0003DMT400018076 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1910 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-25 | C2H2-like zinc finger protein |