PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g03080

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bZIP

Protein Properties

Length: 376aa MW: 42507.2 Da PI: 6.7179

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g03080	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	7e-11	88	125	5	42
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 k+ rr+++NReAAr+sR+RKka++++Le+ +L + CA05g03080 88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQLE 125 788*************************8655555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.5E-5	84	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.806	86	130	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-7	88	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.49E-6	88	128	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.4E-7	90	132	No hit	No description
PROSITE pattern	PS00036	0	91	106	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.0E-30	175	250	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MNSSTYTQFV ASRRMGICEP LHQIGMWDDF NASCPSTSAT MILEVEKCLE EQIPIMEKRL 60 DNEIEDTSHG TVGTSNRYEA ETSKPIEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK 120 LIQLEQELER ARKQGLYVGG GLDASQLSYS GTASSGTAAF DTEYGQWVEE QNRQTNDLRN 180 ALYHSQISEA DLRVIVDGCL NHYSNLFRIK ATAAKDDVLY IMSGMWKTSA ERFFMWIGGF 240 RPSELLKVLT PHLQLLTEQQ LREVCNLTQS CQQAEDALSQ GMVKLHQILA EAIAAGRLGE 300 GNYSLPQMGP AIEKLEALVR FVNQQADHLR QETLQQMSRI LNTHQAAQGF LALGEYFERL 360 RVLSSQWATR LREPA*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MNSSTYTQFV ASRRMGICEP LHQIGMWDDF NASCPSTSAT MILEVEKCLE EQIPIMEKRL  60
DNEIEDTSHG TVGTSNRYEA ETSKPIEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LIQLEQELER ARKQGLYVGG GLDASQLSYS GTASSGTAAF DTEYGQWVEE QNRQTNDLRN  180
ALYHSQISEA DLRVIVDGCL NHYSNLFRIK ATAAKDDVLY IMSGMWKTSA ERFFMWIGGF  240
RPSELLKVLT PHLQLLTEQQ LREVCNLTQS CQQAEDALSQ GMVKLHQILA EAIAAGRLGE  300
GNYSLPQMGP AIEKLEALVR FVNQQADHLR QETLQQMSRI LNTHQAAQGF LALGEYFERL  360
RVLSSQWATR LREPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	S73826	0.0	S73826.1 mas-binding factor MBF2=transcription factor TGA1a homolog [Solanum tuberosum=potatoes, root, mRNA, 1477 nt].

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016572116.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A
Refseq	XP_016572117.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A1U8GLI3	0.0	A0A1U8GLI3_CAPAN; Transcription factor TGA7
TrEMBL	A0A2G2X9V9	0.0	A0A2G2X9V9_CAPBA; Transcription factor TGA7
TrEMBL	A0A2G2ZFS3	0.0	A0A2G2ZFS3_CAPAN; TGACG-sequence-specific DNA-binding protein TGA-1A
STRING	Solyc04g011670.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-149	TGACG motif-binding factor 4

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]