PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g00840
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 235aa    MW: 27416.1 Da    PI: 9.7155
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g00840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34221132102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++e++++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++++         weF++++Fkkgk++ l++i+
    CA05g00840  22 FLLKTYMLVENPATDDIVSWNSDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVTTSR---------WEFSNDKFKKGKRDILCDIH 109
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    CA05g00840 110 RRKA 113
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3614106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-3217111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5218111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSDHDKSLLD YVVMRKSSPS PFLLKTYMLV ENPATDDIVS WNSDGSAFVV WQPAEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFRKVTTSRW EFSNDKFKKG KRDILCDIHR RKAWTNNNNN  120
NNNNKKDLEE DQSSTSNSSS QYINLVDENK RLKMENGVLN SELSLMKNKC KELIDIVSIF  180
AKSNSEKNEE EKKKKDERPM LFGVRLEVQE EMERKRKRIE LNKIANIFIS QLCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B5e-19221115105Heat shock factor protein 2
5d8l_B5e-19221115105Heat shock factor protein 2
5d8l_D5e-19221115105Heat shock factor protein 2
5d8l_F5e-19221115105Heat shock factor protein 2
5d8l_H5e-19221115105Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754437e-71HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571910.11e-171PREDICTED: heat stress transcription factor B-3
SwissprotO222302e-64HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1U8GL711e-170A0A1U8GL71_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZF881e-170A0A2G2ZF88_CAPAN; heat stress transcription factor B-3
STRINGXP_009617028.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.17e-60heat shock transcription factor B3