PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g15670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 132aa MW: 15481.7 Da PI: 8.9081 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.3e-20 | 21 | 73 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +q+++Le+ Fe +++++ +++ ++A++lgL+ rqV +WFqNrRa++k CA04g15670 21 KRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQVAIWFQNRRARWK 73 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.6 | 2.2e-40 | 20 | 109 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl +qv++LE+ Fe ++kL+p+rKv++a+eLglqprqva+WFqnrRAR+ktkqlE dy+ Lk++y+al+++ +++e+e+e L +e+ CA04g15670 20 KKRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQVAIWFQNRRARWKTKQLEIDYNILKANYEALQHNYSKVEQEKEGLITEV 109 9***********************************************************************************998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.422 | 15 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-20 | 17 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-19 | 18 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.06E-16 | 20 | 76 | No hit | No description |
Pfam | PF00046 | 1.9E-17 | 21 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 25 | 73 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.2E-6 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.2E-6 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.9E-12 | 75 | 110 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MLDGLEDEDG IEESGCGTGK KRRLRVDQVQ ALEKIFEVDN KLDPDRKVKI AQELGLQPRQ 60 VAIWFQNRRA RWKTKQLEID YNILKANYEA LQHNYSKVEQ EKEGLITEVN YKTIKKSSTF 120 YYLKPLPYQF I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 75 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-135 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016569170.1 | 2e-73 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 | ||||
Refseq | XP_016569171.1 | 1e-73 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2 | ||||
Swissprot | P46667 | 1e-40 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | A0A1U8GCV9 | 3e-72 | A0A1U8GCV9_CAPAN; homeobox-leucine zipper protein ATHB-6-like isoform X2 | ||||
TrEMBL | A0A1U8GDK8 | 4e-72 | A0A1U8GDK8_CAPAN; homeobox-leucine zipper protein ATHB-6-like isoform X1 | ||||
TrEMBL | A0A2G2ZQL4 | 4e-72 | A0A2G2ZQL4_CAPAN; Homeobox-leucine zipper protein HOX20 | ||||
TrEMBL | A0A2G3CNP1 | 3e-72 | A0A2G3CNP1_CAPCH; Homeobox-leucine zipper protein HOX20 | ||||
STRING | Solyc04g074700.2.1 | 1e-69 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12939 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 3e-41 | homeobox protein 16 |
Publications ? help Back to Top | |||
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