PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g15240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GATA | ||||||||
Protein Properties | Length: 254aa MW: 28258.9 Da PI: 8.3686 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.6 | 6e-17 | 189 | 226 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cgt++ Tp++Rrgpdg +tLCnaCGl ++ kg++ CA04g15240 189 CTHCGTSSnnTPMMRRGPDGRRTLCNACGLTWANKGVM 226 *******99**************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.665 | 63 | 98 | IPR010399 | Tify domain |
SMART | SM00979 | 4.3E-6 | 63 | 98 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.2E-8 | 69 | 97 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 11.499 | 130 | 172 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.7E-11 | 130 | 172 | IPR010402 | CCT domain |
SMART | SM00401 | 1.6E-11 | 183 | 236 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-12 | 185 | 232 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.0E-14 | 188 | 228 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 9.473 | 189 | 229 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.86E-13 | 189 | 227 | No hit | No description |
Pfam | PF00320 | 8.9E-15 | 189 | 226 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 189 | 216 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MNCQTQGMNV DSHFSGASED VPGGGDEVIG NFPAGIDGGV GGVKVMMPNY TVYSASDVTL 60 LNGEANFDQL TLSFRGRIYV FDGVPTQKVQ LVFQLLGGYE YSPGTQALGL SSASQKDYVD 120 NPVHCADPKR LESLLRFYEK RKKRCYEKKI RYGIRQEVAY RMERKNGLFA RKGSTKPKEE 180 NIPPEETWCT HCGTSSNNTP MMRRGPDGRR TLCNACGLTW ANKGVMRTLY RASYDNTELT 240 ELEFQLTNAR QCI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 2e-49 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571510.1 | 1e-178 | PREDICTED: GATA transcription factor 25-like | ||||
Swissprot | Q9LRH6 | 2e-50 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A1U8GK30 | 1e-176 | A0A1U8GK30_CAPAN; GATA transcription factor 25-like | ||||
STRING | Solyc04g076530.2.1 | 1e-132 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14030 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 2e-42 | ZIM-like 1 |
Publications ? help Back to Top | |||
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