PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g13860
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 278aa    MW: 30510.7 Da    PI: 9.8704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g13860genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.9e-213787256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  CA04g13860 37 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 87
                7********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-233795IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-333795IPR001471AP2/ERF domain
PfamPF008472.0E-143786IPR001471AP2/ERF domain
SMARTSM003803.0E-3737100IPR001471AP2/ERF domain
PROSITE profilePS5103225.7123794IPR001471AP2/ERF domain
CDDcd000181.32E-213796No hitNo description
PRINTSPR003675.7E-123849IPR001471AP2/ERF domain
PRINTSPR003675.7E-126076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAAPSTAITT AAATTATQTA PQPSEVAAEE TGERKRRYRG VRQRPWGKWA AEIRDPHKAA  60
RVWLGTFDTA EAAARAYDEA ALRFRGNRAK LNFPENVRLV PQQQQQQQQQ PPQSTTRLAI  120
SSALPASQFP LMSATVPTTP PSFFQSYNLP QHQNQPPLQQ QQLFPSSEVA RDYWEYSQLL  180
QNPIDFHGQQ SSLLEQMLLA SSMGVLHSHT FPSSSSSSLA TSAASSTSSP AYPMMFSAQQ  240
SRFFQPQTHQ NQGGSSSSSN FPHPFWTSSG HYPPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-233497266ATERF1
3gcc_A8e-233497266ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755163e-95HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569429.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
RefseqXP_016569430.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
RefseqXP_016569431.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1U8GDL30.0A0A1U8GDL3_CAPAN; Ethylene-responsive transcription factor
TrEMBLA0A2G2ZPY10.0A0A2G2ZPY1_CAPAN; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGPGSC0003DMT4000163061e-106(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-25ethylene response factor 110