PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g13010
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 856aa    MW: 95888.2 Da    PI: 9.1695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g13010genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.24.9e-07169189526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  Cr+f + G C++G+ C+F+H+
  CA04g13010 169 VCRDFPA-GKCRRGSDCRFIHP 189
                 5999999.*************9 PP
2zf-CCCH21.25e-07252274326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 t  Cr++ + GtC+ G++CkF+H+
  CA04g13010 252 TITCRNYVK-GTCRWGASCKFSHD 274
                 668******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.638164191IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5164190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5168188IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4169189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558249276IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-4249275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5250274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5252274IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4252274IPR000571Zinc finger, CCCH-type
SMARTSM003560.95300325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.479300326IPR000571Zinc finger, CCCH-type
PfamPF146080.059306323No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MGESEKRRKS LWDAEEPNST NYEEWGAPKA DNLWQSKSRS DWLSGDNVTG TEELRKENYH  60
YKSMSPAFER RGRRSNSHSP DNGRTQPRRY SGRARSRSRS RSRSRGRGEG RSRSRSRGRD  120
RFRTSSRSRS RDRGSMRVQN RSRSPLHNYR RDSYVSGDRR TGLRTSSQVC RDFPAGKCRR  180
GSDCRFIHPD AANHRGGGHS EDNVAERLGS RPERGHISRY TDIEGPGYQS RDRLPDVHHL  240
EDELHRNRSR GTITCRNYVK GTCRWGASCK FSHDGASGDN YDKGTRSASF DHGQDNPASR  300
SGKSLCEYFA AGKCYKDNCK FSHDASSRNH EIRHSDNTGG HRFNDKNNWL NAPKWDDEGR  360
TSDLVKASGW DETAPKWDDE GRPSDLVKAS GWDETAVRKD TAVSVLTDRT NERPGHSFEN  420
ENRAWGSTEP QFMNSERQRA ASPHRGSAGH LNTLNISESS VIQNFTNAQD IHLTSQASDL  480
NMERTSAHVL GHKSNQGSSG IILSTIDTQP YGSGGSFVET QGLTDDSIAR TLGSNVVNEF  540
MNSRDSVHHV GLPGQSFSGT GIGMKSEHSA VLNGAHQEPN VFLPIRSTGH NKREAPGTPE  600
MLEFKVPQNL SGTVTGEQVH QMETSPTSMI KKFEEGLREA QLQSVLNPSG PSGMLPSNPI  660
SSLVHALYGQ TNPEMRVPDN YHPPDGFELN TSGNLPNNSF HLDRDSNKAP MEQMNQSYAV  720
DPELGNNDQI DEVKQQENKL VEVNGKDKLA LEESKDGLEN NHPGAMHMQA KIEEGSCNKD  780
EKAMRLFKNA LIEFVKEILK PTWKEGKMSR EVHKTVVKKA VDKVTSAMQA EQVPKTQEKI  840
DQYLSYSKPK IAKLVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RSRSRSRGR
2112122RSRSRGRDRFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569575.10.0PREDICTED: serine/arginine repetitive matrix protein 5-like
RefseqXP_016569576.10.0PREDICTED: serine/arginine repetitive matrix protein 5-like
RefseqXP_016569579.10.0PREDICTED: serine/arginine repetitive matrix protein 5-like
TrEMBLA0A1U8GN930.0A0A1U8GN93_CAPAN; serine/arginine repetitive matrix protein 5-like
STRINGPGSC0003DMT4000637990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-12C3H family protein