PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g11770

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 508aa MW: 56483.1 Da PI: 5.8539

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g11770	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.3	2.8e-103	124	500	1	373
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalklfsevsPilkf 93 lv+lL+++Aea+s +++ la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l + s++ +a +p+ ++e+++ ++laa++l++++sP++kf CA04g11770 124 LVHLLMAAAEALSGVNKSreLARVILVRLKELASPNGaTNMERLAAHFTDALQALLDGAASGTLHAKhmfSPNYKDEQHQGDVLAAFQLLQDMSPFVKF 222 68*********85554449************99*************9977777655411266666666699************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +h+taNqaIle+v++++rvHi+D+di++G+QW++L+qa+ sR++gpp +lRiT+ gs s +++etg+rL+ fA+++g pf+f+ ++ e+++ CA04g11770 223 GHFTANQAILESVAHDRRVHIVDYDIMEGIQWASLMQAFVSRKDGPPtpHLRITAXGS-GRRSFGTVQETGRRLTAFAASIGQPFSFHHCRLDSDETFK 320 ***************************************776556*****.556999********************9999** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvEr 287 + +L++ +gEal++n++l+l ++ + ++ ++L+ k+l+P++v++ve+e+ ++e F+ rf+++l++ysal+dslea++p +s++r+ vEr CA04g11770 321 PTNLKLVRGEALIINCMLHLPHFSYRASDS---VASFLSGSKNLNPRLVTLVEEEIRPigEEEGFVGRFMDTLHHYSALYDSLEAGFPLQSRARTLVER 416 ******************98554444...459***************987767889******************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373 ++l+++i+ +a + r+e+++ +W e+l+++GF + ++s + +qaklll ++ dgyrvee + lvlgWk+r+L+s+S W CA04g11770 417 VFLRPHITGSLARIYRVREEDER--YSWGEWLGAVGFCKSNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRLFSASIW 500 ************9877776..89***************************.**9768999************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.709	98	481	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.5E-101	124	500	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MAMMVDETIP DFDYYGSLST TTTTTTATTT TSSSENDHDH GCTWNDWSPV LDWGAFSGGD 60 NFQDLIESMI QGHNSTGGVN VNFHPSVNYF WKSISSEDSA GLIEEDYLED SNNNQSADIN 120 GLKLVHLLMA AAEALSGVNK SRELARVILV RLKELASPNG ATNMERLAAH FTDALQALLD 180 GAASGTLHAK HMFSPNYKDE QHQGDVLAAF QLLQDMSPFV KFGHFTANQA ILESVAHDRR 240 VHIVDYDIME GIQWASLMQA FVSRKDGPPT PHLRITAXGS GRRSFGTVQE TGRRLTAFAA 300 SIGQPFSFHH CRLDSDETFK PTNLKLVRGE ALIINCMLHL PHFSYRASDS VASFLSGSKN 360 LNPRLVTLVE EEIRPIGEEE GFVGRFMDTL HHYSALYDSL EAGFPLQSRA RTLVERVFLR 420 PHITGSLARI YRVREEDERY SWGEWLGAVG FCKSNISFAN HCQAKLLLGL FNDGYRVEEI 480 GTNKLVLGWK SRRLFSASIW NTTDTDL*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MAMMVDETIP DFDYYGSLST TTTTTTATTT TSSSENDHDH GCTWNDWSPV LDWGAFSGGD  60
NFQDLIESMI QGHNSTGGVN VNFHPSVNYF WKSISSEDSA GLIEEDYLED SNNNQSADIN  120
GLKLVHLLMA AAEALSGVNK SRELARVILV RLKELASPNG ATNMERLAAH FTDALQALLD  180
GAASGTLHAK HMFSPNYKDE QHQGDVLAAF QLLQDMSPFV KFGHFTANQA ILESVAHDRR  240
VHIVDYDIME GIQWASLMQA FVSRKDGPPT PHLRITAXGS GRRSFGTVQE TGRRLTAFAA  300
SIGQPFSFHH CRLDSDETFK PTNLKLVRGE ALIINCMLHL PHFSYRASDS VASFLSGSKN  360
LNPRLVTLVE EEIRPIGEEE GFVGRFMDTL HHYSALYDSL EAGFPLQSRA RTLVERVFLR  420
PHITGSLARI YRVREEDERY SWGEWLGAVG FCKSNISFAN HCQAKLLLGL FNDGYRVEEI  480
GTNKLVLGWK SRRLFSASIW NTTDTDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-58	113	501	8	379	Protein SCARECROW
5b3h_A	8e-58	113	501	7	378	Protein SCARECROW
5b3h_D	8e-58	113	501	7	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269\|PubMed:15961668}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961668}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016570146.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein
Swissprot	Q5NE24	0.0	NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBL	A0A2G2ZN05	0.0	A0A2G2ZN05_CAPAN; Nodulation-signaling pathway 2 protein
STRING	XP_009799696.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12241	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-149	GRAS family protein

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513]