PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA04g08750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 103aa MW: 11083.7 Da PI: 7.206 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.7 | 5.9e-36 | 13 | 100 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+ dC++apyf +e+ p+kf ++hk+FGasnv+kll+++p ++r da+ ++ yeA+ar++dP+yG+v+ i++l+qq+ CA04g08750 13 PCGACKFLRRKCVVDCIFAPYFYSEEgPSKFDAIHKVFGASNVSKLLHNVPVDDRCDAVVTISYEAKARIKDPIYGCVANIFALEQQV 100 7*********************888879**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.903 | 12 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-35 | 13 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MESSSSTGGT GSPCGACKFL RRKCVVDCIF APYFYSEEGP SKFDAIHKVF GASNVSKLLH 60 NVPVDDRCDA VVTISYEAKA RIKDPIYGCV ANIFALEQQV LN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 3 | 100 | 1 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 3 | 100 | 1 | 97 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-116 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571034.1 | 2e-69 | PREDICTED: LOB domain-containing protein 10-like | ||||
Swissprot | Q9SLB7 | 5e-52 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A1U8GSE3 | 4e-68 | A0A1U8GSE3_CAPAN; LOB domain-containing protein 10-like | ||||
STRING | Solyc06g083930.1.1 | 9e-57 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400051680 | 8e-57 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8446 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 5e-50 | lateral organ boundaries-domain 16 |