PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g35040
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 360aa    MW: 39044.8 Da    PI: 6.5008
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g35040genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.2e-17247281135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  CA03g35040 247 CLHCASDKTPQWRTGPMGPKTLCNACGVRYKSGRL 281
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.5E-7911336IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.189241277IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-16241291IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-13244278IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-15244305No hitNo description
CDDcd002026.45E-14246297No hitNo description
PfamPF003205.7E-15247281IPR000679Zinc finger, GATA-type
PROSITE patternPS003440247272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEASDFFVSG FFSHAGDEQN PNNNNCNNNN NSNGNNFIVD ELLDFPNEDE VMADAFFDSI  60
TGNNSADSST VTVVDSCNSS VSGGDAQFNG NLSCRSFTDA PFPTSELCVP YDQVAELEWL  120
SNFVEESFSS DDLQNLQFVP VPNVNSTTQT TDSSSSATTI STGISSPLVF PADTSVPGKA  180
RSKRSRAAPC DWSSRLKLLL SPATSSSDSN NNNNAGSAAN NNAAFTGKAS KAPSRKRENV  240
EVPGRKCLHC ASDKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPASS PTFISAKHSN  300
SHRKVLELRR QKELHRVQQV HQHQHQLLSQ PTIFGVSNGG DEFLLHHHQN CGPNFRHLI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562658.10.0PREDICTED: GATA transcription factor 12-like
TrEMBLA0A2G3A3M20.0A0A2G3A3M2_CAPAN; GATA transcription factor
STRINGXP_009628152.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-70GATA transcription factor 12