PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g33870
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 291aa    MW: 31980.8 Da    PI: 7.8778
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g33870genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.1e-13130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
       CA03g33870 130 PWTEEEHRLFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKY 174
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.179153IPR017877Myb-like domain
SMARTSM007171.1255IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-7559IPR009057Homeodomain-like
CDDcd001676.01E-5653No hitNo description
PROSITE profilePS5129416.902123179IPR017930Myb domain
SuperFamilySSF466894.67E-17125180IPR009057Homeodomain-like
SMARTSM007173.2E-11127177IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.3E-17127177IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-11128173IPR009057Homeodomain-like
PfamPF002491.9E-11130174IPR001005SANT/Myb domain
CDDcd001671.39E-10130175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSPSDWSREE EKAFENAIAM HWVENCEQQW EKFGLMVPTK TIDELKQHYQ LLVDDVTAIE  60
AGQVPIPNYK GEEASSSSTK EGNLGYSAGS VDRRSNCGYS NGFSGTNHDP IGHGGKGNSR  120
SEQERRKGIP WTEEEHRLFL LGLEKFGKGD WRSISRNFVI SRTPTQVASH AQKYFIRLNS  180
MNRDRRRSSI HDITSINNGD VSTHQAPITG QQVNTNPSNA AALGPSVKHR TQPNMHGMGM  240
YGAPMGHPVA APSSHMASAV GTPVMMPHGH PPYVLPVAYP IPPPPPPMHQ *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563106.10.0PREDICTED: transcription factor DIVARICATA
SwissprotB8A9B21e-83MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH591e-83MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A1U8FVE80.0A0A1U8FVE8_CAPAN; Transcription factor DIVARICATA
TrEMBLA0A2G3A3A90.0A0A2G3A3A9_CAPAN; transcription factor DIVARICATA
TrEMBLA0A2G3D1840.0A0A2G3D184_CAPCH; Transcription factor DIVARICATA
STRINGPGSC0003DMT4000143500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.18e-83MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]