PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g32730
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WOX
Protein Properties Length: 397aa    MW: 44610.4 Da    PI: 7.0755
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g32730genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.8e-2279138357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  CA03g32730  79 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 138
                 7*****************99**************************************97 PP
2Wus_type_Homeobox115.42.8e-3778140365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
         CA03g32730  78 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 140
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.5E-576143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-979138IPR009057Homeodomain-like
PfamPF000466.9E-2079138IPR001356Homeobox domain
SuperFamilySSF466892.48E-1279144IPR009057Homeodomain-like
CDDcd000861.11E-680140No hitNo description
PROSITE profilePS5007111.25684139IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MWMMGYNDGG DFNMPDSFNG RKLRPLMPRV PHPPNPTANP TNCLRSIHGD NFIALNHHQL  60
AMSEQNKRDF HTQQLVVSSR WNPTPEQLQT LEELYRRGTR TPSAEQIQHI TAQLRRYGKI  120
EGKNVFYWFQ NHKARERQKR RRQLESAANG AAGGGDDQSH SNCNAENTER KESGANRTVF  180
EIEQTKHWPC PTNCSTIPEK TAATTKAMAA AAAGGVAESC RAAAEKWIPF DEGEQRRSLL  240
AERNATWQMM HLSCSTPNNT NTIHLMNNNS TSTICSNIVT ATSNPITSSC PSTPRTMDHQ  300
PKQLFKPKDH LNIFIAPFRS ACDQKQHENI VNVIGDDDEE GHGESQTLEL FPLRSSSDNN  360
DENIFCDKDE IGAAANSNNN FNGSHYQFFE FLPLKN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2762530.0JF276253.1 Nicotiana sylvestris STENOFOLIA 1 (STF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554423.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A2G3A3150.0A0A2G3A315_CAPAN; WUSCHEL-related homeobox 6
STRINGPGSC0003DMT4000144640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.17e-55WUSCHEL related homeobox 1