PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g32070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | WRKY | ||||||||
Protein Properties | Length: 361aa MW: 39929.2 Da PI: 8.225 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.5 | 1.5e-29 | 169 | 229 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+k CA03g32070 169 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHSK 229 58***************************99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-28 | 160 | 229 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.04 | 164 | 230 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-24 | 166 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-33 | 169 | 229 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-24 | 170 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEFTSLVDTS LDLSFRPLRV PDDIPKQEVE SNFIGLGRDL MPDKDDQAGD LLEELNRVSA 60 ENKKLTEMLT VMCQNYNALR NQLTEYLNKQ NSTTSTAADN NHDHHSDGSK KRKVENNNNE 120 IVKSVQGLHS ESSSSDEDSS NKKPREQHIK TNTCRVYVKT EASDTSLIVK DGYQWRKYGQ 180 KVTRDNPSPR AYFKCSFAPT CPVKKKVQRS VEDQSILVAT YEGEHNHSKM DGSGPVTTSP 240 SSRLNPKNTL VGANTTTVMP CSSTSIINTP SGPTLTLDLT QPKKLQNDQK KVNSNTSTSN 300 ASGQKSKSPG GHDHHQQNRP EFQQLFIDQM ASSLTKDPSF QAALAAAISG KFLQNNHTDK 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-20 | 168 | 227 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ249255 | 0.0 | GQ249255.1 Capsicum annuum WRKYd transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562883.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1U8G2I1 | 0.0 | A0A1U8G2I1_CAPAN; probable WRKY transcription factor 40 | ||||
STRING | PGSC0003DMT400051047 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 9e-89 | WRKY DNA-binding protein 40 |