PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g28010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 323aa MW: 37089 Da PI: 4.7842 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 83 | 136 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le++F +++++ e++ +LAk+lgL+ rq+ +WFqNrRa++k CA03g28010 83 KKRRLTDNQVQFLEKCFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWK 136 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.1 | 1.6e-40 | 82 | 172 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE++F ee+kLeperKv+la+eLglqprq+a+WFqnrRAR+ktkqlEk+ye L+++yd lk++ ++L ke+e+Lr e+ CA03g28010 82 EKKRRLTDNQVQFLEKCFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKTKQLEKEYEELRNRYDDLKSNYNTLLKEKENLRVEV 172 69*************************************************************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.41E-19 | 73 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-19 | 81 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.10E-17 | 83 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 83 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.8E-17 | 83 | 136 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.2E-6 | 109 | 118 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.2E-6 | 118 | 134 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-11 | 138 | 179 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MMARGMLYGG GSNFDQKQRD MYFSTAKEHL GSLFGPDCSS FFGSSSMVSF RGVNGGKRSF 60 FDSFDQEDNE ADELGEYFHQ AEKKRRLTDN QVQFLEKCFG EENKLEPERK VQLAKELGLQ 120 PRQIAIWFQN RRARWKTKQL EKEYEELRNR YDDLKSNYNT LLKEKENLRV EVFQLTDKLL 180 VKEKGNGQLT LCDIQKQSNA SVEVTVADPI SRVELSNVPS RILKQQKQED LSSAKSDVFD 240 SESPHYTDKR HSTFIDQGDS ARVFETEQSD LSQDDDENFG KAMLSTANLL GKVEDDDYPA 300 TSSNMHYFGF PSDDQGFGFW TY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARWKTKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-137 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 1e-137 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. | |||
GenBank | X94947 | 1e-137 | X94947.1 L.esculentum mRNA for homeobox protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016563582.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A1U8FWN1 | 0.0 | A0A1U8FWN1_CAPAN; Homeobox-leucine zipper protein HOX5 | ||||
TrEMBL | A0A2G3A1R9 | 0.0 | A0A2G3A1R9_CAPAN; homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A2G3CYM5 | 0.0 | A0A2G3CYM5_CAPCH; Homeobox-leucine zipper protein HOX5 | ||||
STRING | PGSC0003DMT400065207 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-40 | homeobox 1 |