PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g25570
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 337aa    MW: 38663.2 Da    PI: 5.7988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g25570genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY832.9e-26186244259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 dD ++WrKYGqK +kgs+fpr+Y++C ++  C+++k++e+s+++  ++ + Y+g Hnh+
  CA03g25570 186 DDIWSWRKYGQKFIKGSPFPRNYFKCNTSeLCQARKQIEKSSKNDCFFLVAYSGMHNHD 244
                 8*************************77769***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.88E-22180246IPR003657WRKY domain
PROSITE profilePS5081128.197180246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-24180246IPR003657WRKY domain
SMARTSM007741.4E-27185245IPR003657WRKY domain
PfamPF031066.7E-21186244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDDNNWDLGA VIRNCGINRP SNDITPNLGS ESLNFDDDDL NFLDRIFGVD NNNFDYIAPT  60
NFSISRQEKS YDQFDDIINP TTPVSIIANP FKITNQNDNQ QIYLPPIQPA QVSQQVFLSS  120
PSGVEARECV PTTTTTTISH ECINLQQQLL MWDSTLTMRN PPIQIRKSKN QSIWTTYELF  180
QEELTDDIWS WRKYGQKFIK GSPFPRNYFK CNTSELCQAR KQIEKSSKND CFFLVAYSGM  240
HNHDPPIIRR SFSDWNHSSK YKLPKGINII PKALKLNASP FSSKSGKRYR ASSTLETEST  300
SRKKNKMIVE TMKNNVDDKE EENINEDVPK GFEELN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-16168246377Probable WRKY transcription factor 4
2lex_A4e-16168246377Probable WRKY transcription factor 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566910.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A2G2ZZI30.0A0A2G2ZZI3_CAPAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-26WRKY DNA-binding protein 27