PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g24270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 387aa    MW: 43306 Da    PI: 8.4812
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g24270genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.67.5e-116133851374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                 lv+lL++cAeav+ +d+++a+ lL++l+  a   g+++qR+a++f+++La rla  +  +++  +++ + ++++   +++  al+l++e++P ++f+h+
  CA03g24270  13 LVQLLITCAEAVACRDKSRASVLLSELRSSALVFGTSFQRVASCFMQGLADRLALvQPLGMVGYVASPAMNKTDiaLEKKEEALRLLYEMCPHIQFGHF 111
                 689***************************************************944445655555555555556788889999*************** PP

        GRAS  97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                 +aN+ Ilea+ege+ +H++D+++s    +G QW  L+q+La+Rp+ pp +lRiT+vg+    + e+ + +g+ L+ +A++lg+++ef++ v+++le+l+
  CA03g24270 112 VANSLILEAFEGESFIHVVDLGMSlglpHGHQWRRLIQSLANRPGHPPrRLRITAVGQ----NIEKFQVIGDELEAYARSLGISLEFSA-VESNLENLK 205
                 ********************99874444678*************877779********....99*************************.79******* PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 +++++   gE+l+Vn++lqlh +++es    +   +vL++v +lsP+++v+veq+++hn++ Fl rf+eal+yysa+fdsl++ lp+ + +r+k+E+++
  CA03g24270 206 PKDIKAYDGEVLVVNSILQLHCVVKESRGALN---SVLQVVHELSPRILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTKRAKIEQFY 301
                 ************************88877777...8*************************************************************** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++  +a qak  l+kv+  +g+++ ee+g+lvlgW ++p+v++S+W+
  CA03g24270 302 FAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MAPQAKQWLAKVNgHEGFTITEEKGCLVLGWTSKPIVAASCWK 385
                 ***************************************96..688**********9****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.8951366IPR005202Transcription factor GRAS
PfamPF035142.6E-11313385IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MRRKQXNGEA VKLVQLLITC AEAVACRDKS RASVLLSELR SSALVFGTSF QRVASCFMQG  60
LADRLALVQP LGMVGYVASP AMNKTDIALE KKEEALRLLY EMCPHIQFGH FVANSLILEA  120
FEGESFIHVV DLGMSLGLPH GHQWRRLIQS LANRPGHPPR RLRITAVGQN IEKFQVIGDE  180
LEAYARSLGI SLEFSAVESN LENLKPKDIK AYDGEVLVVN SILQLHCVVK ESRGALNSVL  240
QVVHELSPRI LVLVEQDSSH NGPFFLGRFM EALHYYSAIF DSLDVMLPKY DTKRAKIEQF  300
YFAEEIKNIV SCEGPARVER HERVDQWRRR MSRAGFQAAP IKMAPQAKQW LAKVNGHEGF  360
TITEEKGCLV LGWTSKPIVA ASCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6113847378Protein SCARECROW
5b3h_A1e-6113846377Protein SCARECROW
5b3h_D1e-6113846377Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567682.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1U8G8M80.0A0A1U8G8M8_CAPAN; DELLA protein RGL1-like
STRINGSolyc03g110950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81672130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.16e-79GRAS family protein