PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g19130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 396aa    MW: 44552.3 Da    PI: 4.2541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g19130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19135184255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  CA03g19130 135 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 184
                 89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-29134191IPR001471AP2/ERF domain
PfamPF008471.1E-12135184IPR001471AP2/ERF domain
CDDcd000184.85E-33135191No hitNo description
SMARTSM003801.9E-38135198IPR001471AP2/ERF domain
PROSITE profilePS5103223.657135192IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-21135191IPR016177DNA-binding domain
PRINTSPR003674.7E-10136147IPR001471AP2/ERF domain
PRINTSPR003674.7E-10158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDYDMLCPIK YTEHRNVIRK VSKPSLIKSK KFPETSKSPQ YNPSVPRTVR ISVTDPDATD  60
SSSDEEEDQL FGRRRVKKYI NEISIEAAPI KCEVSSSTAK NSEKTMVNKR ALEALQVKQK  120
PMKVQTPQST STVRKFRGVR QRPWGKWAAE IRDPARRVRL WLGTYDTAEE AAMVYDNAAI  180
KLRGPDALTN FITPPKPAPE PEPEPEISVP SHSGYESGND SRNIPSPTSV LRFRMSQSSE  240
ETDQQSQCPS VQGPMECEQT VQEVVEPFVQ NAEPLESVPQ QEDVEECQGE TSMIPDYSND  300
YLPTDVPFLE NYFNFEVPEQ TLFEDIPTTT TTSYPNNLGS SNNDISSLDF ANDFLFNDDD  360
FANFDDAFQD LGTLGVDDYF QDIVDYSSVD SLLAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21134191159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21134191462ATERF1
3gcc_A2e-21134191462ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564441.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A1U8FZ530.0A0A1U8FZ53_CAPAN; Ethylene-responsive transcription factor CRF2
TrEMBLA0A2G2ZZN30.0A0A2G2ZZN3_CAPAN; ethylene-responsive transcription factor CRF4
STRINGXP_009596437.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-57cytokinin response factor 4