PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g16670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 435aa    MW: 47705.7 Da    PI: 7.6392
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g16670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.8e-08112133426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+++ + G C yG++C+F H+
  CA03g16670 112 KVCNYWVK-GNCTYGNTCRFLHS 133
                 68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.1362349IPR000571Zinc finger, CCCH-type
SMARTSM003560.482348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7108133IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5110134IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-6111133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-6112133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.3E-15134240IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.1E-6139178IPR001680WD40 repeat
SuperFamilySSF509783.02E-44141428IPR017986WD40-repeat-containing domain
PfamPF004008.2E-6142178IPR001680WD40 repeat
PROSITE profilePS5029419.538146394IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.084146187IPR001680WD40 repeat
PRINTSPR003207.1E-7165179IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM00320160218254IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.106.0E-31241430IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.5E-4261298IPR001680WD40 repeat
PfamPF004009.3E-4263298IPR001680WD40 repeat
PROSITE profilePS5008212.814268307IPR001680WD40 repeat
PROSITE patternPS006780285299IPR019775WD40 repeat, conserved site
PRINTSPR003207.1E-7285299IPR020472G-protein beta WD-40 repeat
SMARTSM003202.2E-4301338IPR001680WD40 repeat
PfamPF004000.0097303337IPR001680WD40 repeat
PRINTSPR003207.1E-7325339IPR020472G-protein beta WD-40 repeat
SMARTSM003203.1342385IPR001680WD40 repeat
SMARTSM003204.1388425IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEMDGSKRVF HRLGPSQLDN SNNKQQKVCF HWRAGRCNRF PCPFLHREIQ GPPPHQQQHV  60
AGNGMSSSSS KRPHGFNDDN RGGGGMRRNP NFNNTWGRTA PGGGAVVKKT EKVCNYWVKG  120
NCTYGNTCRF LHSWTTGDCF TLLTQLEGHQ KVVTGIALPS GSDKLYSGST DKTVRVWDCQ  180
SGQCAGVVNF DGEVGSMLSE GPWIFVGLTN LVKAWNTQTG TDLSLNGPVG QVYALVVGND  240
MLLAGTEDGI LAWKYNGSTN NFDPVKALTG HTHHVVSLVV GANRLYSGSM DNSIRVWNLE  300
TLECVQVLTD HTSVVMSVLC WDQFLLSCSL DKTIKVWAAN ESGNLEVTYT HQEERGLLAL  360
CGMHDSEAKP VLLCSCNDNT IRVYDLPSFS ERGKIFSKEG VRRIEIGPAG LFFTGDESGQ  420
VRVWKWSTES SSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A7e-201434288323Tako8
6g6n_A7e-201434288323Tako8
6g6n_B7e-201434288323Tako8
6g6n_C7e-201434288323Tako8
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-106HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564720.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2G2ZYU60.0A0A2G2ZYU6_CAPAN; Zinc finger CCCH domain-containing protein 63
STRINGSolyc03g026350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1