PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g12230
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 290aa    MW: 33390.5 Da    PI: 6.8441
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g12230genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.35.7e-22120182159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEE.EEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvv.eitYegeHnhe 59 
                 ++Dg++WrKYGqK++ +s++pr YYrCt++   +C+++k+v   +e+pk++ ++tY g+H+++
  CA03g12230 120 MNDGCAWRKYGQKSILNSKYPRCYYRCTHKydqDCRATKQVHIMQENPKIMyHTTYFGNHTCN 182
                 58***************************99999**************975389*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-22112183IPR003657WRKY domain
SuperFamilySSF1182902.48E-21114183IPR003657WRKY domain
PROSITE profilePS5081116.088115184IPR003657WRKY domain
SMARTSM007742.7E-30120183IPR003657WRKY domain
PfamPF031064.1E-21121181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEELVDETPR KRLIKELVEG KSFAKQLQSL LQQPNIEHYD GSVLADELVL KIWRSFTQAI  60
TELNTLVDSN SILVQTQMEP IXXXXNSELK KKGKQGGKDR RGCYKRRNNS GSWMRESETM  120
NDGCAWRKYG QKSILNSKYP RCYYRCTHKY DQDCRATKQV HIMQENPKIM YHTTYFGNHT  180
CNPAKIRKHI NNAQFNHSML ECPPFEVKPK IPSSVTHDST EEEEESLKGQ SDNVSSTMDS  240
YLWEDFMPPS PSAHDSTLAS HNSSYFQGLI SSEMGDLVKF SDFEAIEFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18118181668OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894LKKKGKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4844010.0KF484401.1 Capsicum annuum cultivar TL 1791 WRKY70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311793.10.0probable WRKY transcription factor 70
SwissprotK4BIZ91e-116WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A2G2ZX020.0A0A2G2ZX02_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000531221e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-37WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]