PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g02670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 30700.6 Da PI: 9.2914 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll+++vk++G g+W+++ar g++R +k+c++rw +yl CA03g02670 23 KGPWTADEDRLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYL 70 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+++++++++++G++ W+tIar ++ gRt++++k++w+++ CA03g02670 76 RGQITPNEEKIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.551 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-30 | 22 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-16 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-17 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.76E-11 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 19.137 | 75 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-14 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 76 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.12E-9 | 80 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MVCEITSEQM GSNWGFIEEV WRKGPWTADE DRLLIEYVKL HGEGRWNSVA RLTGLRRNGK 60 SCRLRWVNYL RPDLKRGQIT PNEEKIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH 120 FKKKTKNSCD NSEKSRASLW KRQQFQLQQQ QQQQQIKNQI DIKKVMSLPT MAQAKQEMAI 180 LYPNIYTIDQ QDQVGLFYSM LNNSTSISQS EPSSSNEDIM WDDLWNLDDF YGHFINSTTY 240 NKTNTSPCLQ PMASTTTPSF Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 23 | 125 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-128 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 1e-128 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016568105.1 | 1e-176 | PREDICTED: myb-related protein 305-like isoform X1 | ||||
TrEMBL | A0A2G2ZU80 | 0.0 | A0A2G2ZU80_CAPAN; Myb-related protein | ||||
STRING | PGSC0003DMT400003796 | 1e-133 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-76 | myb domain protein 305 |